CA.SFU.FAS.UCC/Papers:2002-11A

New Course Proposal - CMPT 341-3: Introduction to Computational Biology

Arvind Gupta

Revision A - December 20, 2002

Calendar Information

Course Number: CMPT 341

Course Title: Introduction to Computational Biology

Credit Hours: 3 Vector: 3-0-0

Course Description

This course introduces students to the computing science principles underlying computational biology. The emphasis is on the design, analysis and implementation of computational techniques. Possible topics include algorithms for sequence alignment, database searching, gene finding, phylogeny, and structure analysis.

Prerequisite: CMPT 201, MACM 201

Recommended: None.

Corequisite: None.

Special Instructions: None.

Course(s) to be dropped if this course is approved: None.

Rationale for Introduction of this Course

This course is proposed as a core course in the new joint Computing Science/Molecular Biology and Biochemistry program. It will also be available to students in the computing science major program, listed under Table II - Intensive Application Courses.

Will this be a required or elective course in the curriculum; probable enrolment when offered?

Required for CMPT-MBB joint major; elective for CS major; enrolment estimated at 40-60 per year.

Scheduling and Registration Information

Indicate Semester and Year this course would be first offered and planned frequency of offering thereafter.

2004-3 and annually thereafter.

Which of your present CFL faculty have the expertise to offer this course? Will the course be taught by sessional or limited term faculty?

A. Gupta.

Are there any proposed student fees associated with this course other than tuition fees?

No.

Is this course considered a `duplicate' of any current or prior course under the University's duplicate course policy? Specify, as appropriate.

No.

Resource Implications

Note: Senate has approved (S.93-11) that no new course should be approved by Senate until funding has been committed for necessary library materials. Each new course proposal must be accompanied by a library report and, if appropriate, confirmation that funding arrangements have been addressed.

Provide details on how existing instructional resources will be redistributed to accommodate this new course. For instance, will another course be eliminated or will the frequency of offering of other courses be reduced; are there changes in pedagogical style or class sizes that allow for this additional course offering.

This course will be accommodated within the new resources made available through DTO expansion.

Does the course require specialized space or equipment not readily available in the department or university, and if so, how will these resources be provided?

No.

Does this course require computing resources (e.g. hardware, software, network wiring, use of computer laboratory space) and if so, describe how they will be provided.

Computing Resources: Students do not need any special resources other than access to the web.

Course Outline

Topics

Approximately two to three weeks each will be spent on the following topics. The last two topics are only covered if there is time.

Grading

Reference books